Jump to content

HLA-B53

From Wikipedia, the free encyclopedia
major histocompatibility complex (human), class I, B53
Alleles B*5301
B*5302
Structure (See HLA-B)
Symbol(s) HLA-B
EBI-HLA B*5301
EBI-HLA B*5302
Locus chr.6 6p21.31

HLA-B53 (B53) is an HLA-B serotype. The serotype identifies the more common HLA-B*53 gene products.[1] The B53 sequence is identical to B35 but short sequence specifies a Bw4 rather than a Bw6 motif (as found in B35), indicating B53 is a recent product of gene conversion.[2] This suggests an origin for HLA-B53 involving a gene conversion of HLA-B35 by an allele containing this Bw4 sequence. (For terminology help see: HLA-serotype tutorial)

Serotype

[edit]
B53 and B35 serotype recognition of Some HLA B*35 allele-group gene products[3]
B*53 B53 B35 Sample
allele % % size (N)
5301 86 5 3054
5302 80 20 5

B*5301 allele frequencies

[edit]
HLA B*7801 frequencies
freq
ref. Population (%)
[4] Akan Adiopodoume (Ivory Coast) 22.7
[4] Rimaibe (Burkina Faso) 22.3
[4] Mossi (Burkina Faso) 20.8
[4] Bandiagara (Mali) 15.9
[4] Sawa (Cameroon) 11.5
[4] Lusaka (Zambia) 10.2
[4] Baka Pygmy (Cameroon) 10.0
[4] Guinea Bissau 10.0
[4] Harare Shona (Zimbabwe) 9.3
[4] Baloch (Iran) 9.1
[4] Kenya 8.7
[4] Canoncito Navajo (USA) 8.5
[4] Brahui (Pakistan) 7.7
[4] Niokholo Mandenka (Senegal) 5.3
[4] Croatia (2) 5.0
[4] Mongolia Khoton Tarialan 4.9
[4] Pakistan Baloch 4.6
[4] Casablanca (Morocco) 3.7
[4] Arratia Basque (Spain) 3.3
[4] Crete (Greece) 3.2
[4] Israel Arab Druse 2.5
[4] Israel Gaza Palestinians 2.4
[4] Amman (Jordan ) 2.4
[4] Tunis (Tunisia ) 2.3
[4] Tuva (2) (Russia) 2.2
[4] Oman 2.1
[4] France South East 1.6
[4] Saudi Arabia Guraiat and Hail 1.5
[4] Berber (Morocco) 1.4
[4] Georgia Svaneti Svans 1.3
[4] Mongolia Khalkh Ulaanbaatar 1.2
[4] Spain Catalonia Girona 1.1
[4] India Andhra Pradesh Golla 1.0
[4] Mongolia Khalha 1.0

Haplotype frequencies

[edit]
A*3601 : Cw*0401 : B*5301
freq
ref. Population (%)
Zimbabwe 3.6
[4] Zambia Lusaka 2.3
N. Afr. Negroid 2.1
[4] Kenya Luo 1.9
[4] Cameroon Yaounde 1.7
[5] African American 1.5
[4] Kenya Nandi 1.3
[5] American Hispanic 0.2
'
A*6802 : Cw*0401 : B*5301
[4] Mali Bandihagara 2.7
[5] African American 1.4
[4] Kenya Nandi 1.0
[5] Hispanic American 0.6
[5] Caucasian American 0.2

Despite its low frequency, the A36-Cw4-B53 haplotype is one of the most common A-Cw-B haplotypes, as it is the 4th most common in African Americans.

References

[edit]
  1. ^ Marsh, S. G.; Albert, E. D.; Bodmer, W. F.; Bontrop, R. E.; Dupont, B.; Erlich, H. A.; Fernández-Viña, M.; Geraghty, D. E.; Holdsworth, R.; Hurley, C. K.; Lau, M.; Lee, K. W.; Mach, B.; Maiers, M.; Mayr, W. R.; Müller, C. R.; Parham, P.; Petersdorf, E. W.; Sasazuki, T.; Strominger, J. L.; Svejgaard, A.; Terasaki, P. I.; Tiercy, J. M.; Trowsdale, J. (2010). "Nomenclature for factors of the HLA system, 2010". Tissue Antigens. 75 (4): 291–455. doi:10.1111/j.1399-0039.2010.01466.x. PMC 2848993. PMID 20356336.
  2. ^ Allsopp CE, Hill AV, Kwiatkowski D, et al. (1991). "Sequence analysis of HLA-Bw53, a common West African allele, suggests an origin by gene conversion of HLA-B35". Hum. Immunol. 30 (2): 105–9. doi:10.1016/0198-8859(91)90078-N. PMID 2022493.
  3. ^ derived from IMGT/HLA
  4. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak al am an Middleton D, Menchaca L, Rood H, Komerofsky R (2003). "New allele frequency database". Tissue Antigens. 61 (5): 403–7. doi:10.1034/j.1399-0039.2003.00062.x. PMID 12753660.
  5. ^ a b c d e Maiers M, Gragert L, Klitz W (2007). "High-resolution HLA alleles and haplotypes in the United States population". Hum. Immunol. 68 (9): 779–88. doi:10.1016/j.humimm.2007.04.005. PMID 17869653.