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Definition

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Tetrel bond is a type of non-covalent interaction. This bonding is recently identified in the field of supramolecular chemistry. This bond is formed by a tetrel atom (carbon, silicon, germanium) and an electronegative atom  (nitrogen, oxygen or fluorine.). A tetrel atom belongs to Group 14 in the Periodic Table. It has a partial positive charge due to its electrophilic nature, which makes the attraction to nucleophilic regions. This leads to the formation of inter-or intramolecular tetrel bonds. These interactions play a key role in the stabilization of molecular structures and influence molecular recognition processes [1].

Historical aspects

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In the 1960s and 70s, important studies revealed that elements like carbon, silicon, sulfur, and noble gases could act like Lewis acids in interactions similar to halogen bonds. Henry Bent, a prominent physical chemistry professor, initially explained these interactions within electron donor-acceptor complexes, emphasizing the importance of an orbital interaction model. Bent's reviews and Alcock's research on secondary bonding provided detailed insights into various interactions, including tetrel bonds (Group 14), pnictogen bonds (Group 15), chalcogen bonds (Group 16), and aerogen bonds (Group 18).

Nathaniel Alcock, an American scientist in 1971, introduced the term 'secondary bond' to describe linear intermolecular interactions where main group elements act as Lewis acids. The ongoing debate centered on determining the most suitable bonding description and the potential use of both models.

Meanwhile, one of the earliest instances leading to the discovery of tetrel bonds was when Devendra Mani and Arunan observed that adding an electron-withdrawing group to methane created a positively charged region on its opposite side [2]. This positive area could interact favorably with nucleophiles like water, initially termed a carbon bond by these authors.

Later on, Bauzá identified similar interactions between Si, Ge, and Sn with oxygen or halogen-containing molecules, expanding the concept of tetrel bonds for the carbon family. All together, their research proposed a comprehensive definition of tetrel bonds based on existing literature evidence, outlining donors, acceptors, and key features observed in various phases and computational studies.[3]

Comparison of tetrel with other non-covalent bonds

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Figure 1 : Scheme of SiH3Br Molecular Electrostatic Potentials (MEP). Color ranges are: red, greater than 105 kJ/mol ; green, between 52 kJ/mol and 0 kJ/mol ; blue, less than 0 kJ/mol. Adapted from [4].

There are various distinctions and similarities among non-covalent bonds. We can wonder which bonds are the strongest or the weakest. Thanks to few studies, we can compare these different non covalent bonds. Here on this scheme, we can observe the molecular electrostatic potentials (MEPs) of SiH3Br in Figure 1. This map is a specific representation that can be used to illustrate tetrel bonds with different atom. A σ-hole occurs along the Br-Si link which is on the opposite side of the Br atom. The σ-hole is due to the Br electronegativity. The tetrel bond can be compared to an halogen bond or an hydrogen bond.

Indeed, the electronegativity of the Br leads to a σ-hole which can act as the Lewis acid site for the formation of a halogen bond with a Lewis base such as a fluor atom. Furthermore, the lone pair on the other Br atom acts as the Lewis base thanks to its negative MEP to form a hydrogen bond with an hydrogen.

Table 1: The most positive MEPs (Vmax, kJ/mol) on the σ-hole of the halogen and tetrel atoms as well as the most negative MEPs (Vmin, kJ/mol) on the halogen atom in the molecules YH3X (X=halogen; Y=C and Si)[4]
Vmax(X) Vmax(Y) Vmin(X)
CH3F 87.90 -95.71
CH3Cl 2.07 73.46 -61.28
CH3Br 27.04 66.88 -55.39
CH3I 56.82 54.04 -46.72
SiH3F 162.84 -86.59
SiH3Cl -5.94 150.62 -39.27
SiH3Br 14.95 145.86 -35.06
SiH3I 40.68 135.01 -29.41

Now, we will focus on the σ-hole of TB. The table 1 table shows electrostatics potentials of different tetrel bonds, YH3X (X=halogen, Y=C and Si).  We remark that, when the halogen atomic mass increases, the surface of the positive MEP, Vmax(X), on the halogen atom rises. To illustrate, Vmax(X) is the small green part on the halogen atom of the figure 1. Moreover, when Y=C is changed to Y=Si, we observe the inverse effect, the Vmax(X) is reduced due to the lower electronegativity of Si. Whereas, the negative MEP, Vmin(X) (the blue part of the halogen atom) becomes less negative with the increasing halogen atomic number. In the periodic table, electronegativity is inversely proportional to the atomic number in a column.

If we look at the Y atom (C or Si), the positive MEP, Vmax(Y), is bigger when it is linked with a lighter X and a heavier Y atom.

We can acknowledge important information thanks to table 1. The Vmax(Y) is larger than Vmax(X) except if X=I and Y=C. Consequently, the tetrel atom is a much better Lewis acid than the halogen atom.[4]

Tetrel Bond donors and acceptors

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To understand tetrel bonds and the complexity of their interactions, it's essential to understand the role of donors and acceptors. First of all, a donor is an atom or groups of atoms within a molecule that can provide a density of electrons, thus facilitating the formation of telescopic bonds.

Let's take a look at carbon. Carbon behaves like an acceptor, as it generally tends to attract electrons towards itself. However, there are some contradictions with this statement. Take, for example, methyl radicals and carbenes, which possess extra electrons and can therefore act as unconventional electron donors in tetrel bonding scenarios. The same applies to acceptors, which can react with electron-rich donors.

The concept of electron acceptance in tetrel bonding aligns with the broader understanding of non-covalent interactions, where electrostatic attraction serves as the fundamental driving force. It provides insights into how polarization and dispersion also influence the stability of tetrel bonds.

The roles of donor and acceptor can then provide insights into the mechanisms underlying tetrel bonding and its various applications in different chemical systems. This concept is most widely used in fields ranging from crystal engineering to catalysis and photovoltaics.[5][6]

Interaction with Functional groups

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Hypervalent Halogen Compounds

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Hypervalent halogen compounds form tetral bonds (TB) with distinct characteristics depending on the variation in electronegativity of the atoms involved. In the molecule PhXF2Y(TF3), where X and Y are halogens and T can be C or Si, increasing the electronegativity of the halogen atom X strengthens the TB, while increasing the electronegativity of the halogen atom Y diminishes this strength.

In the case where -TF3 is adjacent to a hypervalent halogen atom, the strength of the TB formed varies with the electronegativity of the hypervalent halogen atom X, increasing with it, but decreasing with the electronegativity of the halogen atom Y. This trend is observed for both C and Si systems. Electrostatic interactions play a major role in the formation of these bonds.

TB strength varies according to position in the periodic table, with a tendency to increase in the order Si < Ge < Sn, and a noticeable change when hydrogen atoms are replaced by halogens. Molecular deformation is also an important factor, and can lead to charge transfer between molecules.

In chemical reactions such as SN2, tetral bond strength plays a crucial role in the transfer of -TX3 groups. Because of their oxidizing properties and special structures, hypervalent halogens are important in organic synthesis.

Characteristics of hypervalent halogen compounds include variation in electrostatic potential and specific geometric structures, revealing significant differences between tetral bonds formed with carbon and silicon atoms.[7]

Properties of bonding and reactivity

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Figure 2 : Scheme of σ hole in group 14 tetrel elements. Position, number, and depth (light to dark blue) of σ holes on tetrels group, increasing with the polarizability of the element. Adapted from [8].

Halogen, chalcogen, pnictogen, and tetrel bonds arise from regions of low electron density, known as σ holes, which interact with electron-rich acceptor sites (which are often lone pairs, including anions). Once formed, these different types of chemical bonds will be collinear with the respective covalent bond. Associated with the antibonding σ* orbital, the σ holes extend linearly from the covalent bonds. Thus, each family of elements (halogens, chalcogens, pnictogens, and tetrels) possesses a distinct number of σ holes: one for halogens, two for chalcogens, three for pnictogens, and four for tetrels. The more polarizable the chemical element, the deeper the σ hole, meaning it increases from top to bottom and from right to left in the periodic table (Figure 2).

The tetrel bond has several properties such as its strong directionality and high hydrophobicity, which make it very useful in the context of precision catalysis in apolar environments. Indeed, the first mentioned property allows catalysts to selectively target specific chemical reactions under conditions where molecules are less likely to dissolve in water. Moreover, the halogen, chalcogen and pnictogen bonds also share these two same properties and are just as favorable for precision catalysis.

In contrast to halogen and chalcogen bonding, catalysis through pnictogen and tetrel bonding provides greater depth and number of σ holes within chiral binding pockets. Nevertheless, as σ holes become deeper, interactions not only intensify but also begin to approach covalent character, transitioning gradually from mere interaction to chemical reaction [9].

Application

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Tetrel Bond applications cover diverse fields such as crystal engineering, biology, materials science, catalysis, photovoltaics, medicinal and supramolecular chemistry, drug discovery and biomolecular design.

This bond is used to describe the attractive non-covalent interactions that occur when Group 14 elements in molecules act as electrophilic sites for nucleophilic sites in different states of matter (solid, liquid, gas). These interactions lead to the formation of complex chemical systems. A considerable amount of research has been carried out into the nature of the Tetrel bond donors (TtBD) and acceptors (TtBA) that interact attractively to form Tetrel bonds.[10]

Molecular recognition and sensing

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Crystal engineering

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References

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  1. ^ Varadwaj, Pradeep R.; Varadwaj, Arpita; Marques, Helder M.; Yamashita, Koichi (2023). "Definition of the tetrel bond". CrystEngComm. 25 (9): 1411–1423. doi:10.1039/D2CE01621D. ISSN 1466-8033.
  2. ^ Casals-Sainz, José Luis; Castro, Aurora Costales; Francisco, Evelio; Pendás, Ángel Martín (2019-06-12). "Tetrel Interactions from an Interacting Quantum Atoms Perspective". Molecules. 24 (12): 2204. doi:10.3390/molecules24122204. ISSN 1420-3049. PMC 6632095. PMID 31212835.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  3. ^ Scheiner, Steve (2021). "Origins and properties of the tetrel bond". Physical Chemistry Chemical Physics. 23 (10): 5702–5717. doi:10.1039/D1CP00242B. ISSN 1463-9076.
  4. ^ a b c Liu, Mingxiu; Li, Qingzhong; Li, Wenzuo; Cheng, Jianbo; McDowell, Sean A. C. (2016). "Comparison of hydrogen, halogen, and tetrel bonds in the complexes of HArF with YH 3 X (X = halogen, Y = C and Si)". RSC Advances. 6 (23): 19136–19143. doi:10.1039/C5RA23556A. ISSN 2046-2069.
  5. ^ Varadwaj, Pradeep R.; Varadwaj, Arpita; Marques, Helder M.; Yamashita, Koichi (2023). "Definition of the tetrel bond". CrystEngComm. 25 (9): 1411–1423. doi:10.1039/D2CE01621D. ISSN 1466-8033.
  6. ^ Scheiner, Steve (2021). "Origins and properties of the tetrel bond". Physical Chemistry Chemical Physics. 23 (10): 5702–5717. doi:10.1039/D1CP00242B. ISSN 1463-9076.
  7. ^ Niu, Zhihao; McDowell, Sean A. C.; Li, Qingzhong (2023-10-14). "The Tetrel Bonds of Hypervalent Halogen Compounds". Molecules. 28 (20): 7087. doi:10.3390/molecules28207087. ISSN 1420-3049. PMC 10609133. PMID 37894566.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  8. ^ Chen, Hao; Frontera, Antonio; Ángeles Gutiérrez López, M.; Sakai, Naomi; Matile, Stefan (2022-12). "Pnictogen‐Bonding Catalysts, Compared to Tetrel‐Bonding Catalysts: More Than Just Weak Lewis Acids". Helvetica Chimica Acta. 105 (12). doi:10.1002/hlca.202200119. ISSN 0018-019X. {{cite journal}}: Check date values in: |date= (help)
  9. ^ Chen, Hao; Frontera, Antonio; Ángeles Gutiérrez López, M.; Sakai, Naomi; Matile, Stefan (2022-12). "Pnictogen‐Bonding Catalysts, Compared to Tetrel‐Bonding Catalysts: More Than Just Weak Lewis Acids". Helvetica Chimica Acta. 105 (12). doi:10.1002/hlca.202200119. ISSN 0018-019X. {{cite journal}}: Check date values in: |date= (help)
  10. ^ Varadwaj, Pradeep R.; Varadwaj, Arpita; Marques, Helder M.; Yamashita, Koichi (2023). "Definition of the tetrel bond". CrystEngComm. 25 (9): 1411–1423. doi:10.1039/D2CE01621D. ISSN 1466-8033.
  11. ^ Varadwaj, Pradeep R. (2022-12-02). "Tetrel Bonding in Anion Recognition: A First Principles Investigation". Molecules. 27 (23): 8449. doi:10.3390/molecules27238449. ISSN 1420-3049. PMC 9738195. PMID 36500544.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  12. ^ Roeleveld, Julius J.; Lekanne Deprez, Siebe J.; Verhoofstad, Abraham; Frontera, Antonio; van der Vlugt, Jarl Ivar; Mooibroek, Tiddo Jonathan (2020-08-06). "Engineering Crystals Using sp 3 ‐C Centred Tetrel Bonding Interactions". Chemistry – A European Journal. 26 (44): 10126–10132. doi:10.1002/chem.202002613. ISSN 0947-6539.