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Bioinformatics

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Software and File Formats

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File formats
FASTA format
FASTQ format
General feature format
Gene transfer format
Nexus file
Newick format
Protein Data Bank (file format)
Standard Flowgram Format
Variant Call Format
Software
Sequerome
ETBLAST
PSI Protein Classifier
BioJava
BioPerl
BLAST
FASTA
SBML
GenBank
BLOSUM
Sequence database
SIMAP
Reading frame
CLC bio
BLAT (bioinformatics)
CS-BLAST
HMMER
Bowtie (sequence analysis)