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User:Jennifer Rfm/ENOD40

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ENOD40
A sequence logo for the ENOD40 peptide.
Identifiers
SymbolENOD40
PfamPF08247
InterProIPR013186
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
ENOD40
ENOD40 secondary structure and sequence conservation
Identifiers
SymbolENOD40
RfamRF01845
Other data
RNA typeNon-coding RNA
Domain(s)Magnoliophyta
PDB structuresPDBe

enod40, also known as early nodulin 40, is a gene found in flowering plants. The gene has characteristics of both protein and Non-coding RNA genes.[1] There is some evidence that the non-coding characteristics of this gene are more widely conserved than the protein coding sequences.[2] In soyabeans enod40 was found to be expressed during early stages of formation of nitrogen-fixing root nodules that are associated with symbiotic soil rhizobial bacteria. [3] [4] The gene is also active in roots containing fungi forming phosphate-acquiring arbuscular mycorrhiza. [5]

See also

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References

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  1. ^ Crespi MD, Jurkevitch E, Poiret M, d'Aubenton-Carafa Y, Petrovics G, Kondorosi E, Kondorosi A (1994). "enod40, a gene expressed during nodule organogenesis, codes for a non-translatable RNA involved in plant growth". EMBO J. 13 (21): 5099–112. PMID 7957074.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  2. ^ Gultyaev AP, Roussis A (2007). "Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants". Nucleic Acids Res. 35 (9): 3144–52. doi:10.1093/nar/gkm173. PMC 1888808. PMID 17452360.
  3. ^ Yang WC, Katinakis P, Hendriks P, Smolders A, de Vries F, Spee J, van Kammen A, Bisseling T, Franssen H (1993). "Characterization of GmENOD40, a gene showing novel patterns of cell-specific expression during soybean nodule development". Plant J. 3 (4): 573–85. doi:10.1046/j.1365-313X.1993.03040573.x. PMID 8220464.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  4. ^ Kouchi H, Hata S (1993). "Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development". Mol Gen Genet. 238 (1–2): 106–19. PMID 7683079.
  5. ^ van Rhijn P, Fang Y, Galili S, Shaul O, Atzmon N, Wininger S, Eshed Y, Lum M, Li Y, To V, Fujishige N, Kapulnik Y, Hirsch AM (1997). "Expression of early nodulin genes in alfalfa mycorrhizae indicates that signal transduction pathways used in forming arbuscular mycorrhizae and Rhizobium-induced nodules may be conserved". Proc Natl Acad Sci U S A. 94 (10): 5467–72. doi:10.1073/pnas.94.10.5467. PMID 11038545.{{cite journal}}: CS1 maint: multiple names: authors list (link)

Further reading

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  • Podkowinski J, Zmienko A, Florek B, Wojciechowski P, Rybarczyk A, Wrzesinski J, Ciesiolka J, Blazewicz J, Kondorosi A, Crespi M, Legocki A (2009). "Translational and structural analysis of the shortest legume ENOD40 gene in Lupinus luteus". Acta Biochim Pol. 56 (1): 89–102. PMID 19287803.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Wan X, Hontelez J, Lillo A, Guarnerio C, van de Peut D, Fedorova E, Bisseling T, Franssen H (2007). "Medicago truncatula ENOD40-1 and ENOD40-2 are both involved in nodule initiation and bacteroid development". J Exp Bot. 58 (8): 2033–41. doi:10.1093/jxb/erm072. PMID 17452749.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Gultyaev AP, Roussis A (2007). "Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants". Nucleic Acids Res. 35 (9): 3144–52. doi:10.1093/nar/gkm173. PMC 1888808. PMID 17452360.
  • Murakami Y, Miwa H, Imaizumi-Anraku H, Kouchi H, Downie JA, Kawaguchi M, Kawasaki S (2006). "Positional cloning identifies Lotus japonicus NSP2, a putative transcription factor of the GRAS family, required for NIN and ENOD40 gene expression in nodule initiation". DNA Res. 13 (6): 255–65. doi:10.1093/dnares/dsl017. PMID 17244637.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Lee A, Lum MR, Hirsch AM (2007). "ENOD40 Gene Expression and Cytokinin Responses in the Nonnodulating, Nonmycorrhizal (NodMyc) Mutant, Masym3, of Melilotus alba Desr". Plant Signal Behav. 2 (1): 33–42. PMID 19516966.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Ruttink T, Boot K, Kijne J, Bisseling T, Franssen H (2006). "ENOD40 affects elongation growth in tobacco Bright Yellow-2 cells by alteration of ethylene biosynthesis kinetics". J Exp Bot. 57 (12): 3271–82. doi:10.1093/jxb/erl089. PMID 16957021.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Grønlund M, Roussis A, Flemetakis E, Quaedvlieg NE, Schlaman HR, Umehara Y, Katinakis P, Stougaard J, Spaink HP (2005). "Analysis of promoter activity of the early nodulin Enod40 in Lotus japonicus". Mol Plant Microbe Interact. 18 (5): 414–27. doi:10.1094/MPMI-18-0414. PMID 15915640.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Guzzo F, Portaluppi P, Grisi R, Barone S, Zampieri S, Franssen H, Levi M (2005). "Reduction of cell size induced by enod40 in Arabidopsis thaliana". J Exp Bot. 56 (412): 507–13. doi:10.1093/jxb/eri028. PMID 15557291.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Röhrig H, John M, Schmidt J (2004). "Modification of soybean sucrose synthase by S-thiolation with ENOD40 peptide A.". Biochem Biophys Res Commun. 325 (3): 864–70. doi:10.1016/j.bbrc.2004.10.100. PMID 15541370.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Campalans A, Kondorosi A, Crespi M (2004). "Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula". Plant Cell. 16 (4): 1047–59. doi:10.1105/tpc.019406. PMID 15037734.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Dey M, Complainville A, Charon C, Torrizo L, Kondorosi A, Crespi M, Datta S (2004). "Phytohormonal responses in enod40-overexpressing plants of Medicago truncatula and rice". Physiol Plant. 120 (1): 132–139. doi:10.1111/j.0031-9317.2004.0208.x. PMID 15032885.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Compaan B, Ruttink T, Albrecht C, Meeley R, Bisseling T, Franssen H (2003). "Identification and characterization of a Zea mays line carrying a transposon-tagged ENOD40". Biochim Biophys Acta. 1629 (1–3): 84–91. PMID 14522083.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Vleghels I, Hontelez J, Ribeiro A, Fransz P, Bisseling T, Franssen H (2003). "Expression of ENOD40 during tomato plant development". Planta. 218 (1): 42–9. doi:10.1007/s00425-003-1081-9. PMID 14508686.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Santi C, von Groll U, Ribeiro A, Chiurazzi M, Auguy F, Bogusz D, Franche C, Pawlowski K (2003). "Comparison of nodule induction in legume and actinorhizal symbioses: the induction of actinorhizal nodules does not involve ENOD40". Mol Plant Microbe Interact. 16 (9): 808–16. doi:10.1094/MPMI.2003.16.9.808. PMID 12971604.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Girard G, Roussis A, Gultyaev AP, Pleij CW, Spaink HP (2003). "Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean". Nucleic Acids Res. 31 (17): 5003–15. doi:10.1093/nar/gkg721. PMID 12930950.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Larsen K (2003). "Molecular cloning and characterization of a cDNA encoding a ryegrass (Lolium perenne) ENOD40 homologue". J Plant Physiol. 160 (6): 675–87. doi:10.1078/0176-1617-00962. PMID 12872490.
  • Favery B, Complainville A, Vinardell JM, Lecomte P, Vaubert D, Mergaert P, Kondorosi A, Kondorosi E, Crespi M, Abad P (2002). "The endosymbiosis-induced genes ENOD40 and CCS52a are involved in endoparasitic-nematode interactions in Medicago truncatula". Mol Plant Microbe Interact. 15 (10): 1008–13. doi:10.1094/MPMI.2002.15.10.1008. PMID 12437298.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Varkonyi-Gasic E, White DW (2002). "The white clover enod40 gene family. Expression patterns of two types of genes indicate a role in vascular function". Plant Physiol. 129 (3): 1107–18. doi:10.1104/pp.010916. PMID 12114565.
  • Rohrig H, Schmidt J, Miklashevichs E, Schell J, John M (2002). "Soybean ENOD40 encodes two peptides that bind to sucrose synthase". Proc Natl Acad Sci U S A. 99 (4): 1915–20. doi:10.1073/pnas.022664799. PMID 11842184.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Staehelin C, Charon C, Boller T, Crespi M, Kondorosi A (2001). "Medicago truncatula plants overexpressing the early nodulin gene enod40 exhibit accelerated mycorrhizal colonization and enhanced formation of arbuscules". Proc Natl Acad Sci U S A. 98 (26): 15366–71. doi:10.1073/pnas.251491698. PMID 11752473.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Imaizumi-Anraku H, Kouchi H, Syono K, Akao S, Kawaguchi M (2000). "Analysis of ENOD40 expression in alb1, a symbiotic mutant of Lotus japonicus that forms empty nodules with incompletely developed nodule vascular bundles". Mol Gen Genet. 264 (4): 402–10. doi:10.1007/s004380000330. PMID 11129043.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Sousa C, Johansson C, Charon C, Manyani H, Sautter C, Kondorosi A, Crespi M (2001). "Translational and structural requirements of the early nodulin gene enod40, a short-open reading frame-containing RNA, for elicitation of a cell-specific growth response in the alfalfa root cortex". Mol Cell Biol. 21 (1): 354–66. doi:10.1128/MCB.21.1.354-366.2001. PMID 11113209.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Flemetakis E, Kavroulakis N, Quaedvlieg NE, Spaink HP, Dimou M, Roussis A, Katinakis P (2000). "Lotus japonicus contains two distinct ENOD40 genes that are expressed in symbiotic, nonsymbiotic, and embryonic tissues". Mol Plant Microbe Interact. 13 (9): 987–94. doi:10.1094/MPMI.2000.13.9.987. PMID 10975655.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Charon C, Sousa C, Crespi M, Kondorosi A (1999). "Alteration of enod40 expression modifies medicago truncatula root nodule development induced by sinorhizobium meliloti". Plant Cell. 11 (10): 1953–66. doi:10.1105/tpc.11.10.1953. PMID 10521525.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Kouchi H, Takane K, So RB, Ladha JK, Reddy PM (1999). "Rice ENOD40: isolation and expression analysis in rice and transgenic soybean root nodules". Plant J. 18 (2): 121–9. doi:10.1046/j.1365-313X.1999.00432.x. PMID 10363365.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Mirabella R, Martirani L, Lamberti A, Iaccarino M, Chiurazzi M (1999). "The soybean ENOD40(2) promoter is active in Arabidopsis thaliana and is temporally and spatially regulated". Plant Mol Biol. 39 (1): 177–81. doi:10.1023/A:1006146627301. PMID 10080720.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Corich V, Goormachtig S, Lievens S, Van Montagu M, Holsters M (1998). "Patterns of ENOD40 gene expression in stem-borne nodules of Sesbania rostrata". Plant Mol Biol. 37 (1): 67–76. doi:10.1023/A:1005925607793. PMID 9620265.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Fang Y, Hirsch AM (1998). "Studying early nodulin gene ENOD40 expression and induction by nodulation factor and cytokinin in transgenic alfalfa". Plant Physiol. 116 (1): 53–68. doi:10.1104/pp.116.1.53. PMID 9449836.
  • Charon C, Johansson C, Kondorosi E, Kondorosi A, Crespi M (1997). "enod40 induces dedifferentiation and division of root cortical cells in legumes". Proc Natl Acad Sci U S A. 94 (16): 8901–6. doi:10.1073/pnas.94.16.8901. PMID 11038563.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • van de Sande K, Pawlowski K, Czaja I, Wieneke U, Schell J, Schmidt J, Walden R, Matvienko M, Wellink J, van Kammen A, Franssen H, Bisseling T (1996). "Modification of phytohormone response by a peptide encoded by ENOD40 of legumes and a nonlegume". Science. 273 (5273): 370–3. doi:10.1126/science.273.5273.370. PMID 8662527.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Minami E, Kouchi H, Cohn JR, Ogawa T, Stacey G (1996). "Expression of the early nodulin, ENOD40, in soybean roots in response to various lipo-chitin signal molecules". Plant J. 10 (1): 23–32. doi:10.1046/j.1365-313X.1996.10010023.x. PMID 8758977.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Papadopoulou K, Roussis A, Katinakis P (1996). "Phaseolus ENOD40 is involved in symbiotic and non-symbiotic organogenetic processes: expression during nodule and lateral root development". Plant Mol Biol. 30 (3): 403–17. doi:10.1007/BF00049320. PMID 8605294.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Crespi MD, Jurkevitch E, Poiret M, d'Aubenton-Carafa Y, Petrovics G, Kondorosi E, Kondorosi A (1994). "enod40, a gene expressed during nodule organogenesis, codes for a non-translatable RNA involved in plant growth". EMBO J. 13 (21): 5099–112. PMID 7957074.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  • Matvienko M, Van de Sande K, Yang WC, van Kammen A, Bisseling T, Franssen H (1994). "Comparison of soybean and pea ENOD40 cDNA clones representing genes expressed during both early and late stages of nodule development". Plant Mol Biol. 26 (1): 487–93. doi:10.1007/BF00039559. PMID 7948896.{{cite journal}}: CS1 maint: multiple names: authors list (link)
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Category:Non-coding RNA

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