Haplogroup N (mtDNA): Difference between revisions
rvt to neutral info |
→List of descendants: tree |
||
Line 27: | Line 27: | ||
Its derived haplogroups include the macro-[[Haplogroup R (mtDNA)|haplogroup R]] (and its descendants) and haplogroups N1, [[Haplogroup A (mtDNA)|A]], [[Haplogroup I (mtDNA)|I]], [[Haplogroup S (mtDNA)|S]], [[Haplogroup W (mtDNA)|W]], [[Haplogroup X (mtDNA)|X]], and [[haplogroup Y (mtDNA)|Y]]. |
Its derived haplogroups include the macro-[[Haplogroup R (mtDNA)|haplogroup R]] (and its descendants) and haplogroups N1, [[Haplogroup A (mtDNA)|A]], [[Haplogroup I (mtDNA)|I]], [[Haplogroup S (mtDNA)|S]], [[Haplogroup W (mtDNA)|W]], [[Haplogroup X (mtDNA)|X]], and [[haplogroup Y (mtDNA)|Y]]. |
||
=== |
===Tree=== |
||
This phylogenetic tree of haplogroup N subclades is based on the paper by Mannis van Oven and Manfred Kayser ''Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation''<ref name="vanOven"></ref> and subsequent published research. |
|||
* Haplogroup N1 - found in West Eurasia. Most closely related to haplogroup X<ref name="Logan">[http://www.ianlogan.co.uk/mtdna.htm Ian Logan's mtDNA site]</ref>. |
|||
**Haplogroup N1b |
|||
***Haplogroup N1b1 |
|||
***Haplogroup N1b2 |
|||
**Haplogroup N1c- Northern Saudi Arabia, Turkey <ref name="Abu-Amero">Abu-Amero et al. 2008 February. [http://www.biomedcentral.com/1471-2148/8/45 "Mitochondrial DNA structure in the Arabian Peninsula"], BMC Evolutionary Biology. 8(45): 52.</ref> |
|||
**Haplogroup N1d |
|||
**[[Haplogroup N1a (mtDNA)|Haplogroup N1a]]- Arabian Peninsula, Ethiopia and Egypt <ref name="Abu-Amero"/> |
|||
***Haplogroup N1a1 |
|||
****Haplogroup N1a1a (proposed) |
|||
***[[Haplogroup I (mtDNA)|Haplogroup I]] [http://www.ianlogan.co.uk/discussion/hap_N.htm] |
|||
***Haplogroup N1e |
|||
*Haplogroup N5 |
|||
*Haplogroup N2 |
|||
**Haplogroup N2a |
|||
**Haplogroup N2b (proposed) |
|||
***[[Haplogroup W (mtDNA)|Haplogroup W]] [http://www.ianlogan.co.uk/discussion/hap_W.htm] - found in Western Eurasia and South Asia<ref>[http://www.biomedcentral.com/content/pdf/1471-2156-5-26.pdf Mait Metspalu et al. ''Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans''. BMC Genetics, 2004]</ref> |
|||
*Haplogroup N9 - found in East Asia. Most closely related to haplogroup R<ref name="Logan"/>. |
|||
**Haplogroup N9a |
|||
***Haplogroup N9a1 |
|||
***Haplogroup N9a3 |
|||
**Haplogroup N9a2 |
|||
***Haplogroup N9a2a |
|||
***Haplogroup N9a2b |
|||
***Haplogroup N9a2c |
|||
***Haplogroup N9a4 |
|||
***Haplogroup N9a5 |
|||
***Haplogroup N9a6 |
|||
****Haplogroup N9a6a |
|||
**Haplogroup N9b |
|||
***Haplogroup N9b1 |
|||
****Haplogroup N9b1a |
|||
****Haplogroup N9b1b |
|||
***Haplogroup N9b2 |
|||
***Haplogroup N9b3 |
|||
**[[Haplogroup Y (mtDNA)|Haplogroup Y]] [http://www.ianlogan.co.uk/discussion/hap_Y.htm] - found especially among [[Nivkhs]] and [[Ainu people|Ainus]], with a moderate frequency among [[Koreans]], [[Mongols]], [[Tungusic people]]s, [[Koryaks]], [[Itelmens]], [[Chinese people|Chinese]], [[Japanese people|Japanese]], [[Tājik people|Tajiks]], [[Malay Archipelago#Maritime Southeast Asia|Island Southeast Asia]]ns (including [[Taiwanese aborigines]]), and some [[Turkic peoples]]<ref name = "Derenko2007">Miroslava Derenko, Boris Malyarchuk, Tomasz Grzybowski, Galina Denisova, Irina Dambueva, Maria Perkova, Choduraa Dorzhu, Faina Luzina, Hong Kyu Lee, Tomas Vanecek, Richard Villems, and Ilia Zakharov, "Phylogeographic Analysis of Mitochondrial DNA in Northern Asian Populations," ''American Journal of Human Genetics'', 2007 November; 81(5): 1025–1041.</ref> |
|||
*Haplogroup N12 |
|||
**Haplogroup N12a (proposed) |
|||
*[[Haplogroup A (mtDNA)|Haplogroup A]] [http://www.ianlogan.co.uk/discussion/hap_A.htm] - found in Central and East Asia, as well as among Native Americans. |
|||
*[[Haplogroup R (mtDNA)|Haplogroup R]] [http://www.ianlogan.co.uk/discussion/hap_R_star.htm] - a very extended and diversified macro-haplogroup. |
|||
*[[Haplogroup S (mtDNA)|Haplogroup S]] [http://www.ianlogan.co.uk/discussion/hap_S.htm] - found among Australian Aborigines |
|||
*[[Haplogroup X (mtDNA)|Haplogroup X]] [http://www.ianlogan.co.uk/discussion/hap_X.htm] - most common in Western Eurasia, it is closely related to haplogroup N1<ref name="Logan"/>. |
|||
**Haplogroup X1 - found primarily in North Africa as well as in some populations of the Levant, notably among Druzes |
|||
**Haplogroup X2 - found in Western Eurasia, Siberia and among Native Americans |
|||
*N |
|||
Additionally there are several unnamed N* lineages in South Asia, Australia and among the Ket people of central Siberia<ref name="Logan"/>. |
|||
**N1'5 |
|||
***N1 |
|||
****N1a'c'd'e'I |
|||
*****N1a'd'e'I |
|||
******N1a'e'I |
|||
*******N1a |
|||
********N1a1 |
|||
*********N1a1a |
|||
*******N1e'I |
|||
********I |
|||
********N1e |
|||
******N1d |
|||
*****N1c |
|||
****N1b |
|||
*****N1b1 |
|||
******N1b1a |
|||
******N1b1b |
|||
******N1b1c |
|||
****** |
|||
*******N1b1d |
|||
*****N1b2 |
|||
***N5 |
|||
**N2 |
|||
***N2a |
|||
***W |
|||
**N9 |
|||
***N9a |
|||
****N9a1'3 |
|||
*****N9a1 |
|||
*****N9a3 |
|||
****N9a2'4'5 |
|||
***** |
|||
*****N9a2 |
|||
******N9a2a'b |
|||
*******N9a2a |
|||
*******N9a2b |
|||
******N9a2c |
|||
******N9a2d |
|||
*****N9a4 |
|||
*****N9a5 |
|||
****N9a6 |
|||
*****N9a6a |
|||
***N9b |
|||
****N9b1 |
|||
*****N9b1a |
|||
*****N9b1b |
|||
*****N9b1c |
|||
******N9b1c1 |
|||
****N9b2 |
|||
****N9b3 |
|||
***Y |
|||
**N12 |
|||
***N12a |
|||
**N13 |
|||
**N14 |
|||
**N21 |
|||
**N22 |
|||
**A |
|||
**S |
|||
**X |
|||
**R |
|||
==References== |
==References== |
Revision as of 21:48, 29 June 2009
Haplogroup N | |
---|---|
Possible time of origin | unknown, approx. 65,000 years ago |
Possible place of origin | West Asia[1][2][3]or East Africa[1][4][5][6] |
Ancestor | L3 |
Descendants | N1'5, N2, N9, N12, N13, N14, N21, N22, A, R, S, X |
Defining mutations | 8701, 9540, 10398, 10873, 15301 |
In human genetics, Haplogroup N is a human mitochondrial DNA haplogroup. An enormous haplogroup spanning many continents, the macro-haplogroup N, like its sibling M, is a descendant of the East African haplogroup L3
All mtDNA haplogroups found outside of Africa are descendants of either haplogroup N or its sibling haplogroup M. M and N are the signature haplogroups that define the out of Africa migration and the subsequent colonization of the rest of the world. The global distribution of haplogroups N and M, indicates that very likely, there was one particularly major prehistoric migration of humans out of Africa, and both N and M were part of the same colonization process.[7]
Origins
There is widespread agreement in the scientific community concerning the African ancestry of haplogroup L3 (haplogroup N's parent clade),[1].However, whether or not the mutations which define haplogroup N itself first occurred within Asia or Africa has been a subject for ongoing discussion and study. According to a study by Gonzalez et al.[1]
The out of Africa hypothesis has gained generalized consensus. However, many specific questions remain unsettled. To know whether the two M and N macrohaplogroups that colonized Eurasia were already present in Africa before the exit is puzzling.
The authors of the study also state:
Another related disjunctive yet not settled is whether M and N (and its main branch R) arose inside or outside Africa.[1]
Regarding the presence of haplogroups N in Tanzania, Gonder et al write:
These 2 M and N haplogroup clades included a few Tanzanians (belonging to haplogroups M1, M, N1, and J), suggesting possible recent gene flow back into Africa and/or that ancestors of the Tanzanian populations may have been a source of migration of modern humans from Africa to other regions[8]
Torroni et al 2006 state that Haplogroups M, N and R occurred somewhere between East Africa and the Persian Gulf.[9]
Asian origin hypothesis
Haplogroup N is found in all parts of the world but has low frequencies in Sub-Saharan Africa. According to a number of studies, the presence of Haplogroup N in Africa is most likely the result of back migration from Eurasia.[8]
African origin hypothesis
According to Toomas Kivisild "the lack of L3 lineages other than M and N in India and among non-African mitochondria in general suggests that the earliest migration(s) of modern humans already carried these two mtDNA ancestors, via a departure route over the Horn of Africa.[5]
Dispersal
A number of scholars had proposed that haplogroup M dispersed from Africa through the southern route across the Horn of Africa along the coastal regions of Asia onwards to New Guinea and Australia. These studies suggested that the migrations of haplogroups M and N occurred separately with haplogroup N heading northwards from East Africa to the levant. However, numerous the results of numerous recent studies indicate that there was only one migration out of Africa and that haplogroups M and N were part of the same migration. This is based on the analysis of a number of relict populations along the proposed beachcombing route from Africa to Australia, all of which possessed both haplogroups N and M. [7][10]
Distribution
Haplogroup N is derived from the ancestral L3 haplotype that represents the 'Out of Africa' migration. Haplogroup N is the ancestral haplogroup to almost all European and Oceanian haplogroups in addition to many Asian and Amerindian ones. It is believed to have arisen in West Asia at a similar time to haplogroup M. It is also present in the Horn of Africa at a low frequency, carried by a back migration into Africa dating ~30,000 years ago, along with Asian haplotype M1 and other Eurasian associated haplogroups.[2][3]
Descendants of haplogroup N*
Its derived haplogroups include the macro-haplogroup R (and its descendants) and haplogroups N1, A, I, S, W, X, and Y.
Tree
This phylogenetic tree of haplogroup N subclades is based on the paper by Mannis van Oven and Manfred Kayser Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation[11] and subsequent published research.
- N
- N1'5
- N1
- N1a'c'd'e'I
- N1a'd'e'I
- N1a'e'I
- N1a
- N1a1
- N1a1a
- N1a1
- N1e'I
- I
- N1e
- N1a
- N1d
- N1a'e'I
- N1c
- N1a'd'e'I
- N1b
- N1b1
- N1b1a
- N1b1b
- N1b1c
-
- N1b1d
- N1b2
- N1b1
- N1a'c'd'e'I
- N5
- N1
- N2
- N2a
- W
- N9
- N9a
- N9a1'3
- N9a1
- N9a3
- N9a2'4'5
- N9a2
- N9a2a'b
- N9a2a
- N9a2b
- N9a2c
- N9a2d
- N9a2a'b
- N9a4
- N9a5
- N9a2
- N9a6
- N9a6a
- N9a1'3
- N9b
- N9b1
- N9b1a
- N9b1b
- N9b1c
- N9b1c1
- N9b2
- N9b3
- N9b1
- Y
- N9a
- N12
- N12a
- N13
- N14
- N21
- N22
- A
- S
- X
- R
- N1'5
References
- ^ a b c d e Gonzalez et al. (2007), Mitochondrial lineage M1 traces an early human backflow to Africa, BMC Genomics 2007, 8:223 doi:10.1186/1471-2164-8-223
- ^ a b Richards et al. (2006), A Model for the Dispersal of Modern Humans out of Africa, Nucleic Acids and Molecular Biology, 10.1007/3-540-31789-9
- ^ a b Chandrasekar et al. (2007), YAP insertion signature in South Asia, Ann Hum Biol. 2007 Sep-Oct;34(5):582-6.
- ^ Watson (1997). "Mitochondrial Footprints of Human Expansions in Africa".
{{cite journal}}
: Cite journal requires|journal=
(help) - ^ a b Kivisild; et al. (2003). "The Genetic Heritage of the Earliest Settlers Persists Both in Indian Tribal and Caste Populations".
{{cite journal}}
: Cite journal requires|journal=
(help); Explicit use of et al. in:|last=
(help) - ^ Kivisild; et al. (2007). "Genetic Evidence of Modern Human Dispersals in South Asia". The Evolution and History of Human Populations in South Asia.
{{cite book}}
: Explicit use of et al. in:|last=
(help); External link in
(help); Unknown parameter|chapterurl=
|chapterurl=
ignored (|chapter-url=
suggested) (help) - ^ a b Macaulay; et al. (2005). "Single, Rapid Coastal Settlement of Asia Revealed by Analysis of Complete Mitochondrial Genomes" (PDF). doi:10.1126/science.1109792.
{{cite journal}}
: Cite journal requires|journal=
(help); Explicit use of et al. in:|last=
(help) - ^ a b Gonder; et al. (2006). "Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages".
{{cite journal}}
: Cite journal requires|journal=
(help); Explicit use of et al. in:|last=
(help) - ^ Torroni; et al. (2006). "Harvesting the fruit of the human mtDNA tree". doi:10.1016/j.tig.2006.04.001.
{{cite journal}}
: Cite journal requires|journal=
(help); Explicit use of et al. in:|last=
(help) - ^ Hudjashov, Kivisild; et al. (2007). "Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis".
{{cite journal}}
: Cite journal requires|journal=
(help); Explicit use of et al. in:|last=
(help) - ^ Cite error: The named reference
vanOven
was invoked but never defined (see the help page).
See also
- Genealogical DNA test
- Genetic Genealogy
- Human mitochondrial genetics
- Population Genetics
- Human mitochondrial DNA haplogroups
Phylogenetic tree of human mitochondrial DNA (mtDNA) haplogroups | |||||||||||||||||||||||||||||||||||||||
Mitochondrial Eve (L) | |||||||||||||||||||||||||||||||||||||||
L0 | L1–6 | ||||||||||||||||||||||||||||||||||||||
L1 | L2 | L3 | L4 | L5 | L6 | ||||||||||||||||||||||||||||||||||
M | N | ||||||||||||||||||||||||||||||||||||||
CZ | D | E | G | Q | O | A | S | R | I | W | X | Y | |||||||||||||||||||||||||||
C | Z | B | F | R0 | pre-JT | P | U | ||||||||||||||||||||||||||||||||
HV | JT | K | |||||||||||||||||||||||||||||||||||||
H | V | J | T |
External links
- General
- Ian Logan's Mitochondrial DNA Site
- Haplogroup N
- Katherine Borges' Haplogroup N mtDNA Study at Family Tree DNA
- Spread of Haplogroup N, from National Geographic
- Kivisild et al. 2007 Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis