Jump to content

File:Metulodontia-Maximum-Likelihood.svg

Page contents not supported in other languages.
This is a file from the Wikimedia Commons
From Wikipedia, the free encyclopedia

Original file (SVG file, nominally 495 × 414 pixels, file size: 21 KB)

Description

Figure: Molecular Phylogenetic analysis of Metulodontia by the Maximum Likelihood method
The evolutionary history was inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model [1]. The tree with the highest log likelihood (-5311.8139) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. Initial tree(s) for the heuristic search were obtained by applying the Neighbor-Joining method to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach. A discrete Gamma distribution was used to model evolutionary rate differences among sites (5 categories (+G, parameter = 0.4787)). The rate variation model allowed for some sites to be evolutionarily invariable ([+I], 56.3336% sites). The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The analysis involved 17 nucleotide sequences. All positions with less than 95% site coverage were eliminated. That is, fewer than 5% alignment gaps, missing data, and ambiguous bases were allowed at any position. There were a total of 1379 positions in the final dataset. Evolutionary analyses were conducted in MEGA6 [2]


1. Kimura M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
2. Tamura K., Stecher G., Peterson D., Filipski A., and Kumar S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution30: 2725-2729.


List of GenBank Sequences
Date
Source Own work
Author Thkgk
Permission
(Reusing this file)
I, the copyright holder of this work, hereby publish it under the following license:
Creative Commons CC-Zero This file is made available under the Creative Commons CC0 1.0 Universal Public Domain Dedication.
The person who associated a work with this deed has dedicated the work to the public domain by waiving all of their rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission.

Captions

Add a one-line explanation of what this file represents

Items portrayed in this file

depicts

inception

9 September 2014

File history

Click on a date/time to view the file as it appeared at that time.

Date/TimeThumbnailDimensionsUserComment
current20:40, 9 September 2014Thumbnail for version as of 20:40, 9 September 2014495 × 414 (21 KB)Thkgk{{Information |Description= '''Figure: Molecular Phylogenetic analysis of ''Metulodontia'' by the Maximum Likelihood method'''<br/> The evolutionary history was inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model [1]....

The following page uses this file:

Global file usage

The following other wikis use this file:

Metadata

This file contains additional information, probably added from the digital camera or scanner used to create or digitize it.

If the file has been modified from its original state, some details may not fully reflect the modified file.

Retrieved from "https://wiki.riteme.site/wiki/File:Metulodontia-Maximum-Likelihood.svg"